STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0150PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein. (567 aa)    
Predicted Functional Partners:
Ccel_0152
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3208 binding-protein-dependent transport systems inner membrane component.
 
  0.992
Ccel_0151
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_3209 binding-protein-dependent transport systems inner membrane component.
 
 
 0.988
Ccel_2457
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1548 binding-protein-dependent transport systems inner membrane component.
 
   0.759
Ccel_0149
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein.
 
     0.735
Ccel_2456
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpy:Cphy_1547 binding-protein-dependent transport systems inner membrane component.
 
  
 0.729
Ccel_1258
PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y.
 
     0.723
Ccel_1254
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1066 hypothetical protein.
 
   0.716
Ccel_0147
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: bha:BH2109 hypothetical protein.
 
     0.702
Ccel_0146
PFAM: polysaccharide deacetylase; KEGG: pmo:Pmob_0232 polysaccharide deacetylase.
 
     0.695
Ccel_1251
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: hypothetical protein.
  
     0.690
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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