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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0158PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 hypothetical protein. (155 aa)    
Predicted Functional Partners:
Ccel_0157
PFAM: protein of unknown function DUF970; KEGG: tte:TTE0095 hypothetical protein.
  
    0.851
Ccel_0159
KEGG: cth:Cthe_2105 DNA polymerase III, delta prime subunit.
 
     0.816
Ccel_0093
PFAM: FlgN family protein; KEGG: cth:Cthe_2245 hypothetical protein.
 
     0.788
Ccel_0091
KEGG: cth:Cthe_2247 regulatory protein, MerR.
 
     0.780
Ccel_0160
PFAM: PSP1 domain protein; KEGG: cth:Cthe_2104 PSP1.
  
  
 0.761
Ccel_3346
KEGG: cth:Cthe_2247 regulatory protein, MerR.
 
     0.734
Ccel_2038
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 flagellar motor switch protein.
 
    0.730
Ccel_1682
KEGG: cth:Cthe_1061 hypothetical protein.
 
     0.723
tmk
Thymidylate kinase; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
  
    0.713
Ccel_2021
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 hypothetical protein.
  
     0.698
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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