Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0165PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_2099 nucleoside recognition. (195 aa)    
Predicted Functional Partners:
Ccel_0166
PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_2098 nucleoside recognition.
  
 0.999
Ccel_1913
TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD; KEGG: cth:Cthe_0842 stage III sporulation protein AD.
  
  
 0.613
Ccel_1915
TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
  
  
 0.567
Ccel_1916
TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: cth:Cthe_0845 stage III sporulation protein spoIIIAA.
  
  
 0.502
Ccel_1909
KEGG: cth:Cthe_0838 hypothetical protein.
   
  
 0.499
Ccel_1752
TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane; KEGG: cth:Cthe_0675 hypothetical protein.
  
  
 0.494
Ccel_1944
TIGRFAM: stage II sporulation protein P; PFAM: Stage II sporulation P family protein; KEGG: cth:Cthe_1328 stage II sporulation P.
  
   
 0.469
Ccel_1914
TIGRFAM: stage III sporulation protein AC; PFAM: Stage III sporulation AC family protein; KEGG: cth:Cthe_0843 stage III sporulation AC.
   
  
 0.467
Ccel_1912
TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: cth:Cthe_0841 mutants block sporulation after engulfment.
  
  
 0.456
Ccel_0487
PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; KEGG: cth:Cthe_3179 serine-type D-Ala-D-Ala carboxypeptidase.
  
  
 0.441
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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