Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0167KEGG: dsy:DSY2213 hypothetical protein. (352 aa)    
Predicted Functional Partners:
Ccel_1752
TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane; KEGG: cth:Cthe_0675 hypothetical protein.
  
     0.662
Ccel_1351
KEGG: cth:Cthe_0187 hypothetical protein.
  
     0.628
Ccel_1915
TIGRFAM: stage III sporulation protein AB; PFAM: Sporulation stage III protein AB; KEGG: cth:Cthe_0844 stage III sporulation protein spoIIIAB.
  
    0.619
Ccel_1907
KEGG: cth:Cthe_0836 hypothetical protein.
  
     0.614
Ccel_1878
TIGRFAM: sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_1274 nucleoside recognition.
  
     0.587
Ccel_0518
PFAM: 3D domain protein; KEGG: cth:Cthe_0664 hypothetical protein.
  
     0.581
Ccel_0812
Sigma 54 interacting domain protein; KEGG: cth:Cthe_2742 endopeptidase La; TIGRFAM: ATP-dependent protease LonB; PFAM: magnesium chelatase ChlI subunit; AAA ATPase central domain protein; peptidase S16 lon domain protein; SMART: AAA ATPase.
  
     0.561
Ccel_1420
KEGG: bha:BH1410 hypothetical protein.
  
     0.556
Ccel_0390
Hypothetical protein; KEGG: csc:Csac_0946 TPR repeat-containing protein.
  
     0.513
Ccel_0804
KEGG: cth:Cthe_2732 hypothetical protein.
  
     0.490
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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