Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_01703D domain protein; PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein; KEGG: cth:Cthe_2093 hypothetical protein. (356 aa)    
Predicted Functional Partners:
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.844
Ccel_1338
PFAM: Peptidoglycan-binding LysM; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0635 protein serine/threonine phosphatases.
  
  
 0.702
Ccel_1507
KEGG: mag:amb1890 LysM domain-containing protein.
  
  
 0.695
Ccel_0168
TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: cth:Cthe_2095 TatD family hydrolase.
     
 0.675
Ccel_0570
PFAM: protein of unknown function DUF881; KEGG: cth:Cthe_1075 hypothetical protein.
 
     0.635
ispE
4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.
     
 0.619
Ccel_1562
PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: cac:CAC2325 N-acetylglucosaminidase domain- and ChW repeat-containing cell wall hydrolase.
   
  
 0.613
Ccel_0569
PFAM: protein of unknown function DUF881; KEGG: cth:Cthe_1076 hypothetical protein.
 
     0.602
Ccel_2066
PFAM: protein of unknown function DUF1290; KEGG: cth:Cthe_0443 hypothetical protein.
  
     0.569
Ccel_0518
PFAM: 3D domain protein; KEGG: cth:Cthe_0664 hypothetical protein.
 
     0.517
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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