Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0180PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: cth:Cthe_2078 hypothetical protein. (216 aa)    
Predicted Functional Partners:
Ccel_0181
PFAM: protein of unknown function DUF28; KEGG: cth:Cthe_2075 hypothetical protein.
       0.629
Ccel_0543
PFAM: protein of unknown function DUF633; KEGG: cth:Cthe_0893 hypothetical protein.
   
    0.532
Ccel_0179
PFAM: NUDIX hydrolase; KEGG: aoe:Clos_1784 NUDIX hydrolase.
       0.529
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
       0.506
Ccel_2001
PFAM: Mg2 transporter protein CorA family protein; KEGG: mba:Mbar_A0156 transporter.
  
    0.468
Ccel_2172
TIGRFAM: RNA methylase, NOL1/NOP2/sun family; PFAM: Fmu (Sun) domain protein; KEGG: cth:Cthe_3160 NOL1/NOP2/sun family RNA methylase.
   
  
 0.442
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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