STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0186Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: bld:BLi00678 hypothetical protein. (452 aa)    
Predicted Functional Partners:
Ccel_0187
KEGG: lbl:LBL_1122 hypothetical protein.
       0.746
Ccel_0188
PFAM: methyltransferase small; KEGG: cpy:Cphy_3378 methyltransferase small; Belongs to the methyltransferase superfamily.
       0.746
Ccel_1548
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: cpy:Cphy_0464 AraC family transcriptional regulator.
 
   0.688
Ccel_0991
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; AraC protein arabinose-binding/dimerisation; KEGG: csc:Csac_1725 AraC family transcriptional regulator.
  
     0.601
Ccel_1001
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; Cupin 2 conserved barrel domain protein; KEGG: bcl:ABC0403 AraC/XylS family transcriptional regulator.
  
     0.572
Ccel_0189
Hypothetical protein.
       0.550
Ccel_0190
KEGG: cbe:Cbei_3830 hypothetical protein.
       0.550
Ccel_0990
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cpy:Cphy_2734 AraC family transcriptional regulator.
  
   
 0.542
Ccel_0185
KEGG: csc:Csac_0632 hypothetical protein.
       0.517
Ccel_0841
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; KEGG: cbk:CLL_A3535 transcriptional regulator, AraC family.
  
     0.507
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.