STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0190KEGG: cbe:Cbei_3830 hypothetical protein. (127 aa)    
Predicted Functional Partners:
Ccel_0189
Hypothetical protein.
       0.773
Ccel_0191
PFAM: Appr-1-p processing domain protein; KEGG: blo:BL0806 hypothetical protein.
       0.618
Ccel_0192
PFAM: NADPH-dependent FMN reductase; KEGG: cbh:CLC_0982 hypothetical protein.
       0.605
Ccel_0187
KEGG: lbl:LBL_1122 hypothetical protein.
       0.568
Ccel_0188
PFAM: methyltransferase small; KEGG: cpy:Cphy_3378 methyltransferase small; Belongs to the methyltransferase superfamily.
       0.568
Ccel_0186
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: bld:BLi00678 hypothetical protein.
       0.550
Ccel_0193
KEGG: fnu:FN0557 hypothetical protein.
       0.431
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.