STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0192PFAM: NADPH-dependent FMN reductase; KEGG: cbh:CLC_0982 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Ccel_0191
PFAM: Appr-1-p processing domain protein; KEGG: blo:BL0806 hypothetical protein.
       0.764
Ccel_0189
Hypothetical protein.
       0.605
Ccel_0190
KEGG: cbe:Cbei_3830 hypothetical protein.
       0.605
Ccel_0193
KEGG: fnu:FN0557 hypothetical protein.
       0.538
Ccel_1181
Hypothetical protein; KEGG: cbl:CLK_2533 ABC transporter, permease protein.
  
     0.502
Ccel_1144
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afl:Aflv_0303 multidomain redox protein (NAD(FAD)-dependent oxidoreductase; rhodanese domain; SirA-like redox domain; peroxiredoxin domain); Belongs to the sulfur carrier protein TusA family.
 
  
 0.488
Ccel_0186
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: bld:BLi00678 hypothetical protein.
       0.460
Ccel_0187
KEGG: lbl:LBL_1122 hypothetical protein.
       0.454
Ccel_0188
PFAM: methyltransferase small; KEGG: cpy:Cphy_3378 methyltransferase small; Belongs to the methyltransferase superfamily.
       0.454
Ccel_0489
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: cth:Cthe_1205 putative serine protein kinase, PrkA.
   
    0.410
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.