Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0192PFAM: NADPH-dependent FMN reductase; KEGG: cbh:CLC_0982 hypothetical protein. (231 aa)    
Predicted Functional Partners:
Ccel_0191
PFAM: Appr-1-p processing domain protein; KEGG: blo:BL0806 hypothetical protein.
       0.764
Ccel_0189
Hypothetical protein.
       0.605
Ccel_0190
KEGG: cbe:Cbei_3830 hypothetical protein.
       0.605
Ccel_0193
KEGG: fnu:FN0557 hypothetical protein.
       0.538
Ccel_0489
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: cth:Cthe_1205 putative serine protein kinase, PrkA.
   
    0.520
Ccel_1181
Hypothetical protein; KEGG: cbl:CLK_2533 ABC transporter, permease protein.
  
     0.502
Ccel_0186
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; transcription activator effector binding; KEGG: bld:BLi00678 hypothetical protein.
       0.458
Ccel_1338
PFAM: Peptidoglycan-binding LysM; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0635 protein serine/threonine phosphatases.
   
  
 0.455
Ccel_1507
KEGG: mag:amb1890 LysM domain-containing protein.
   
  
 0.455
Ccel_0187
KEGG: lbl:LBL_1122 hypothetical protein.
       0.454
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.