Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0195PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_3008 ABC transporter related. (237 aa)    
Predicted Functional Partners:
Ccel_0196
KEGG: cdf:CD2104 putative ABC transporter, permease protein.
 
    0.958
ecfA-2
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.855
ecfA
ABC transporter related; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
   
0.848
Ccel_0197
PFAM: protein of unknown function DUF1113; KEGG: cpf:CPF_1398 hypothetical protein.
       0.610
Ccel_3261
PFAM: ABC-2 type transporter; KEGG: cdf:CD1603 ABC transporter, permease protein.
 
  
 0.497
Ccel_0194
KEGG: cpo:COPRO5265_1350 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.490
Ccel_2158
KEGG: tle:Tlet_1861 putative ABC-2 type transport system permease protein.
  
 
 0.486
Ccel_0343
PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: cac:CAC1558 ABC-type transport system,membrane ATPase component.
  
  0.446
Ccel_0296
PFAM: ABC-2 type transporter; KEGG: cth:Cthe_2707 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 
 0.425
Ccel_1160
KEGG: hmo:HM1_1647 hypothetical protein.
  
 
 0.425
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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