STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0213KEGG: csc:Csac_0293 hypothetical protein. (223 aa)    
Predicted Functional Partners:
Ccel_0428
PFAM: S-layer domain protein; glycoside hydrolase family 5; Carbohydrate binding family 17/28; KEGG: csc:Csac_0678 cellulase.
  
     0.718
uxaC
PFAM: Glucuronate isomerase; KEGG: bsu:BSU12300 glucuronate isomerase.
 
     0.682
Ccel_0150
PFAM: extracellular solute-binding protein family 1; KEGG: bha:BH2111 hypothetical protein.
  
     0.667
Ccel_2515
KEGG: plu:plu2412 hypothetical protein.
  
     0.635
Ccel_2320
PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: ote:Oter_1101 endo-1,4-beta-xylanase.
  
     0.594
Ccel_2510
PFAM: protein of unknown function DUF201; KEGG: saq:Sare_0485 hypothetical protein.
  
     0.594
Ccel_2319
PFAM: glycoside hydrolase family 10; S-layer domain protein; Carbohydrate-binding CenC domain protein; Carbohydrate-binding family 9; KEGG: swo:Swol_0293 hypothetical protein.
  
     0.574
Ccel_1252
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_1773 peripheral protein.
  
     0.552
Ccel_0210
PFAM: Acetyl xylan esterase; KEGG: bha:BH3326 acetylxylan esterase (cephalosporin-C deacetylase).
  
     0.546
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.545
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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