Ccel_0215 protein (Ruminiclostridium cellulolyticum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Ccel_0215

PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein. (673 aa)

Predicted Functional Partners:

Ccel_0428

0.460

Ccel_0740

0.460

celCCD

0.460

celCCA

0.460

Ccel_2337

0.460

Your Current Organism:

Ruminiclostridium cellulolyticum

NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
Ccel_0215	Ccel_0428	Ccel_0215	Ccel_0428	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	PFAM: S-layer domain protein; glycoside hydrolase family 5; Carbohydrate binding family 17/28; KEGG: csc:Csac_0678 cellulase.	0.460
Ccel_0215	Ccel_0740	Ccel_0215	Ccel_0740	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	PFAM: glycoside hydrolase family 5; cellulosome protein dockerin type I; KEGG: cth:Cthe_2872 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.460
Ccel_0215	Ccel_2337	Ccel_0215	Ccel_2337	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	PFAM: glycoside hydrolase family 5; cellulosome protein dockerin type I; KEGG: cth:Cthe_0536 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	0.460
Ccel_0215	celCCA	Ccel_0215	Ccel_1099	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	0.460
Ccel_0215	celCCD	Ccel_0215	Ccel_0840	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	0.460
Ccel_0428	Ccel_0215	Ccel_0428	Ccel_0215	PFAM: S-layer domain protein; glycoside hydrolase family 5; Carbohydrate binding family 17/28; KEGG: csc:Csac_0678 cellulase.	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	0.460
Ccel_0740	Ccel_0215	Ccel_0740	Ccel_0215	PFAM: glycoside hydrolase family 5; cellulosome protein dockerin type I; KEGG: cth:Cthe_2872 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	0.460
Ccel_2337	Ccel_0215	Ccel_2337	Ccel_0215	PFAM: glycoside hydrolase family 5; cellulosome protein dockerin type I; KEGG: cth:Cthe_0536 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	0.460
celCCA	Ccel_0215	Ccel_1099	Ccel_0215	Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	0.460
celCCA	celCCD	Ccel_1099	Ccel_0840	Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	0.459
celCCD	Ccel_0215	Ccel_0840	Ccel_0215	Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	PFAM: protein of unknown function DUF255; KEGG: cth:Cthe_0291 hypothetical protein.	0.460
celCCD	celCCA	Ccel_0840	Ccel_1099	Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	Glycoside hydrolase family 5; The biological conversion of cellulose to glucose generally requires three types of hydrolytic enzymes: (1) Endoglucanases which cut internal beta-1,4-glucosidic bonds; (2) Exocellobiohydrolases that cut the disaccharide cellobiose from the non-reducing end of the cellulose polymer chain; (3) Beta-1,4-glucosidases which hydrolyze the cellobiose and other short cello-oligosaccharides to glucose.	0.459