Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0218PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: mba:Mbar_A2392 hypothetical protein. (212 aa)    
Predicted Functional Partners:
Ccel_0216
PFAM: transcriptional regulator PadR family protein; KEGG: cbf:CLI_0152 PadR family transcriptional regulator.
       0.504
Ccel_0217
KEGG: cac:CA_P0154 hypothetical protein.
       0.504
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
   
 
 0.502
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
     
 0.466
Ccel_1526
PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0564 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 
 0.413
Ccel_1902
PFAM: Polyprenyl synthetase; KEGG: cth:Cthe_0831 farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.413
Ccel_0219
PFAM: chemotaxis sensory transducer; KEGG: cth:Cthe_0266 methyl-accepting chemotaxis sensory transducer.
       0.401
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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