Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0224KEGG: pth:PTH_0277 hypothetical protein. (217 aa)    
Predicted Functional Partners:
Ccel_0223
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: blj:BLD_0790 ABC-type multidrug transport system ATPase component.
 
     0.899
Ccel_0222
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: cbe:Cbei_4343 regulatory protein GntR, HTH.
 
     0.848
Ccel_1517
KEGG: sfu:Sfum_1625 hypothetical protein.
  
     0.677
Ccel_1519
KEGG: predicted protein.
  
     0.673
Ccel_1515
Hypothetical protein; KEGG: bba:Bd2582 cell wall surface anchor family protein.
  
     0.669
Ccel_1937
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_0243 copper amine oxidase-like protein.
  
     0.662
Ccel_0736
PFAM: cellulosome protein dockerin type I; KEGG: cac:CAC0918 non-processive endoglucanase.
  
     0.644
Ccel_0239
Hypothetical protein; KEGG: LOC100083241; similar to vitellogenin.
  
     0.627
Ccel_2442
PFAM: cellulosome protein dockerin type I; KEGG: gvi:gll3705 unknown protein.
  
     0.620
Ccel_2502
KEGG: cbe:Cbei_0745 hypothetical protein.
 
     0.616
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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