Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0236Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: tex:Teth514_1161 regulatory protein, ArsR. (120 aa)    
Predicted Functional Partners:
Ccel_0234
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; KEGG: aoe:Clos_1087 heavy metal translocating P-type ATPase.
 
  
 0.966
Ccel_0235
PFAM: Heavy metal transport/detoxification protein; KEGG: fma:FMG_0054 putative cation-transporting P-type ATPase.
 
   
 0.860
Ccel_0746
TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper ion binding protein; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: cth:Cthe_1848 copper-translocating P-type ATPase.
  
  
 0.595
Ccel_1144
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afl:Aflv_0303 multidomain redox protein (NAD(FAD)-dependent oxidoreductase; rhodanese domain; SirA-like redox domain; peroxiredoxin domain); Belongs to the sulfur carrier protein TusA family.
  
  
 0.587
Ccel_0237
PFAM: peptidase U57 YabG; KEGG: cth:Cthe_2507 peptidase U57, YabG.
       0.477
Ccel_1065
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: dsy:DSY4600 hypothetical protein.
 
  
0.449
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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