Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0282PFAM: Peptidase M23; KEGG: cth:Cthe_2617 peptidase M23B. (263 aa)    
Predicted Functional Partners:
Ccel_2548
PFAM: Peptidase M23; KEGG: cth:Cthe_0097 peptidase M23B.
  
    0.769
Ccel_2875
PFAM: Peptidase M23; KEGG: cth:Cthe_1757 peptidase M23B.
  
    0.759
Ccel_2905
PFAM: Peptidase M23; KEGG: cth:Cthe_1858 peptidase M23B.
  
    0.747
Ccel_0281
TIGRFAM: SpoIID/LytB domain protein; stage II sporulation protein D; PFAM: Stage II sporulation D domain protein; KEGG: cth:Cthe_2616 SpoIID/LytB domain-containing protein.
 
   
 0.710
Ccel_0279
PFAM: Protein of unknown function DUF1779; KEGG: cth:Cthe_2614 hypothetical protein.
 
   
 0.492
Ccel_0284
PFAM: Domain of unknown function DUF1934; KEGG: cth:Cthe_1936 hypothetical protein.
 
     0.453
ddl
D-alanine/D-alanine ligase; Cell wall formation.
       0.448
Ccel_2876
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cth:Cthe_1760 1A family penicillin-binding protein.
  
     0.436
Ccel_3126
PFAM: Peptidase M23; KEGG: oih:OB2491 hypothetical protein.
  
    0.402
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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