STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0288Hypothetical protein; KEGG: cth:Cthe_1932 S-layer-like domain-containing protein. (906 aa)    
Predicted Functional Partners:
Ccel_0289
PFAM: S-layer domain protein; KEGG: cth:Cthe_1931 S-layer-like domain-containing protein.
 
     0.934
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.773
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
  
     0.772
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
     0.770
Ccel_0254
KEGG: cth:Cthe_2130 hypothetical protein.
  
     0.768
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
     0.767
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
  
     0.762
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
  
     0.761
Ccel_0592
PFAM: regulatory protein MerR; KEGG: cth:Cthe_0804 MerR family transcriptional regulator.
  
     0.760
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
     0.758
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.