Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0289PFAM: S-layer domain protein; KEGG: cth:Cthe_1931 S-layer-like domain-containing protein. (534 aa)    
Predicted Functional Partners:
Ccel_0288
Hypothetical protein; KEGG: cth:Cthe_1932 S-layer-like domain-containing protein.
 
     0.930
Ccel_1126
PFAM: copper amine oxidase domain protein; KEGG: nmr:Nmar_0998 hypothetical protein.
 
   
 0.771
Ccel_3406
KEGG: cth:Cthe_2182 Ig-like, group 2.
  
     0.768
Ccel_2923
KEGG: aoe:Clos_2272 hypothetical protein.
  
     0.761
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
     0.751
Ccel_2334
PFAM: copper amine oxidase domain protein; KEGG: cth:Cthe_1909 copper amine oxidase-like protein.
 
   
 0.744
Ccel_0278
PFAM: S-layer domain protein; KEGG: cth:Cthe_2613 S-layer-like domain-containing protein.
  
     0.738
Ccel_2633
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
  
     0.733
Ccel_2423
PFAM: UspA domain protein; KEGG: cth:Cthe_3089 hypothetical protein.
  
    0.729
Ccel_3019
PFAM: S-layer domain protein; KEGG: swo:Swol_0298 hypothetical protein.
  
     0.728
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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