Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0299KEGG: cth:Cthe_2710 hypothetical protein. (356 aa)    
Predicted Functional Partners:
Ccel_3340
TIGRFAM: sporulation protein YtxC; PFAM: Sporulation protein YtxC; KEGG: cth:Cthe_2071 hypothetical protein.
 
     0.736
Ccel_0298
KEGG: cth:Cthe_2709 hypothetical protein.
 
     0.676
Ccel_0301
KEGG: cth:Cthe_2712 hypothetical protein.
 
     0.658
Ccel_0522
PFAM: Spore germination protein; KEGG: cth:Cthe_0670 spore germination protein.
  
     0.585
Ccel_1912
TIGRFAM: stage III sporulation protein AE; PFAM: Sporulation stage III protein AE; KEGG: cth:Cthe_0841 mutants block sporulation after engulfment.
  
    0.583
Ccel_0296
PFAM: ABC-2 type transporter; KEGG: cth:Cthe_2707 ABC-type transport system involved in multi-copper enzyme maturation, permease component.
       0.579
Ccel_0295
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_2706 ABC transporter related protein.
       0.578
Ccel_0297
KEGG: cth:Cthe_2708 hypothetical protein.
       0.578
Ccel_3360
TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256; KEGG: cth:Cthe_2165 hypothetical protein.
 
  
 0.554
Ccel_0300
KEGG: cth:Cthe_2711 hypothetical protein.
       0.548
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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