STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0319KEGG: cbo:CBO0408 hypothetical protein. (304 aa)    
Predicted Functional Partners:
Ccel_0320
YdaE; KEGG: dth:DICTH_0546 YdaE.
       0.533
Ccel_2311
PFAM: protein of unknown function DUF1540; KEGG: cth:Cthe_3071 hypothetical protein.
  
     0.474
tuf
Translation elongation factor Tu; This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
       0.462
Ccel_2229
KEGG: cbe:Cbei_4038 hypothetical protein.
  
     0.448
Ccel_2230
KEGG: cpy:Cphy_0280 hypothetical protein.
  
     0.447
Ccel_2916
PFAM: GCN5-related N-acetyltransferase; KEGG: cth:Cthe_1870 GCN5-related N-acetyltransferase.
  
     0.421
Ccel_0321
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; KEGG: drm:Dred_2942 hypothetical protein.
 
     0.418
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.