Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ccel_0325PFAM: UvrB/UvrC protein; KEGG: cth:Cthe_1791 UvrB/UvrC protein. (162 aa)    
Predicted Functional Partners:
mcsB
ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in proteins.
 
 
 0.999
Ccel_0324
Transcriptional repressor, CtsR; PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: cth:Cthe_1792 firmicute transcriptional repressor of class III stress genes; Belongs to the CtsR family.
 
  
 0.989
Ccel_0327
PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1789 ATPase AAA-2; Belongs to the ClpA/ClpB family.
 
  
 0.942
Ccel_0258
PFAM: Protein-tyrosine phosphatase, low molecular weight; KEGG: cth:Cthe_2596 protein tyrosine phosphatase.
  
  
 0.775
Ccel_2116
PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_0312 ATPase AAA-2; Belongs to the ClpA/ClpB family.
 
  
 0.729
Ccel_0341
PFAM: PilT protein domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Nucleotide binding protein PINc; KEGG: nth:Nther_0165 PilT protein domain protein.
 
    0.506
Ccel_0336
AAA ATPase; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
  
    0.472
Ccel_0680
PFAM: regulatory protein DeoR; KEGG: cth:Cthe_0938 fatty acid biosynthesis transcriptional regulator.
  
     0.449
Ccel_0328
PFAM: Radical SAM domain protein; KEGG: cpy:Cphy_2677 radical SAM domain-containing protein.
       0.409
Ccel_0329
KEGG: cpy:Cphy_2676 hypothetical protein.
       0.409
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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