Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0329KEGG: cpy:Cphy_2676 hypothetical protein. (360 aa)    
Predicted Functional Partners:
Ccel_0328
PFAM: Radical SAM domain protein; KEGG: cpy:Cphy_2677 radical SAM domain-containing protein.
       0.780
Ccel_0330
Hypothetical protein.
       0.741
Ccel_0331
Hypothetical protein.
       0.741
Ccel_0332
Hypothetical protein.
       0.741
Ccel_0327
PFAM: UvrB/UvrC protein; AAA ATPase central domain protein; Clp domain protein; Torsin; ATPase associated with various cellular activities AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1789 ATPase AAA-2; Belongs to the ClpA/ClpB family.
       0.441
Ccel_0325
PFAM: UvrB/UvrC protein; KEGG: cth:Cthe_1791 UvrB/UvrC protein.
       0.409
mcsB
ATP:guanido phosphotransferase; Catalyzes the specific phosphorylation of arginine residues in proteins.
       0.409
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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