Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0352PFAM: UV-endonuclease UvdE; KEGG: cth:Cthe_1958 putative UV damage endonuclease. (320 aa)    
Predicted Functional Partners:
Ccel_0351
KEGG: tbd:Tbd_2287 putative integral membrane protein.
       0.727
Ccel_0350
PFAM: GtrA family protein; KEGG: pdi:BDI_1652 putative GtrA family protein.
       0.491
Ccel_0624
PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_4361 radical SAM domain protein.
  
   
 0.436
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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