Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0362PFAM: cytochrome b5; KEGG: cth:Cthe_1942 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Ccel_2561
TIGRFAM: rod shape-determining protein MreD; KEGG: cth:Cthe_0090 hypothetical protein.
  
     0.705
Ccel_1448
KEGG: cth:Cthe_1383 tetratricopeptide TPR_2.
  
     0.636
Ccel_2045
PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein.
  
     0.536
Ccel_0361
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: afl:Aflv_2620 sporulation histidine kinase A.
  
    0.503
Ccel_3346
KEGG: cth:Cthe_2247 regulatory protein, MerR.
  
     0.503
Ccel_2046
KEGG: cth:Cthe_0470 hypothetical protein.
  
 
   0.494
Ccel_1909
KEGG: cth:Cthe_0838 hypothetical protein.
  
    0.488
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
 
 
   0.487
Ccel_1954
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: cth:Cthe_1040 DNA polymerase III, delta subunit.
 
     0.478
Ccel_2214
KEGG: cth:Cthe_0359 hypothetical protein.
  
     0.456
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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