Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_0417PFAM: cellulosome protein dockerin type I; KEGG: cth:Cthe_0246 carbohydrate-binding family 6 protein. (848 aa)    
Predicted Functional Partners:
Ccel_1242
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: cth:Cthe_3012 carbohydrate-binding family 6 protein.
  
     0.764
Ccel_2392
PFAM: glycoside hydrolase family 9; cellulosome protein dockerin type I; Carbohydrate-binding CenC domain protein; glycoside hydrolase family 9 domain protein Ig domain protein; KEGG: cac:CAC0561 cellulase CelE-like protein.
 
     0.729
Ccel_1240
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 62; SMART: cellulose binding type IV; KEGG: cth:Cthe_2194 carbohydrate-binding family 6 protein.
  
     0.716
Ccel_1233
Carbohydrate binding family 6; PFAM: cellulosome protein dockerin type I; Carbohydrate binding family 6; glycoside hydrolase family 43; SMART: cellulose binding type IV; KEGG: bfs:BF0575 putative glycosyl hydrolase/xylanase.
  
     0.679
Ccel_1972
PFAM: glycoside hydrolase family 43; KEGG: cth:Cthe_0661 ricin B lectin; Belongs to the glycosyl hydrolase 43 family.
  
     0.672
Ccel_1257
PFAM: glycoside hydrolase family 43; KEGG: fjo:Fjoh_3875 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 43 family.
  
     0.661
Ccel_0750
PFAM: glycoside hydrolase family 11; cellulosome protein dockerin type I; KEGG: cth:Cthe_2972 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.640
Ccel_1866
PFAM: glycoside hydrolase family 11; KEGG: cpy:Cphy_2105 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
  
     0.607
Ccel_0997
PFAM: protein of unknown function DUF1680; KEGG: sus:Acid_1242 hypothetical protein.
  
     0.567
Ccel_2530
PFAM: Ricin B lectin; cellulosome protein dockerin type I; KEGG: scl:sce5172 putative secreted protein.
 
 
0.564
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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