Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0433Hypothetical protein; KEGG: afl:Aflv_0291 uncharacterized conserved two domain fusion protein. (313 aa)    
Predicted Functional Partners:
Ccel_1301
Transcriptional repressor, CopY family; PFAM: Penicillinase repressor; KEGG: hmo:HM1_2921 hypothetical protein.
 
  
 0.731
Ccel_0432
KEGG: tte:TTE1799 hypothetical protein.
       0.499
Ccel_0844
KEGG: cbf:CLI_1565 hypothetical protein.
  
     0.499
Ccel_1217
PFAM: Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
     0.431
Ccel_2784
KEGG: hmo:HM1_0577 hypothetical protein.
  
     0.402
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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