Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0437SMART: extracellular solute-binding protein family 3; KEGG: cth:Cthe_2802 NlpA lipoprotein. (319 aa)    
Predicted Functional Partners:
Ccel_0436
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cth:Cthe_2803 binding-protein-dependent transport systems inner membrane component.
 
 
 0.988
Ccel_0435
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_2804 ABC transporter related protein.
 
 
 0.985
Ccel_0879
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY3394 hypothetical protein.
 
 
 0.932
Ccel_0880
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_2573 ABC transporter related protein.
 
 
 0.884
Ccel_0438
TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: cth:Cthe_2801 carbon-monoxide dehydrogenase, catalytic subunit.
 
  
 0.883
Ccel_2314
PFAM: CheW domain protein; KEGG: cbe:Cbei_4822 putative CheW protein.
 
      0.579
Ccel_0885
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: swo:Swol_0316 extracellular solute-binding protein, family 3.
  
  
 0.440
Ccel_0044
PFAM: extracellular solute-binding protein family 5; KEGG: cth:Cthe_2961 extracellular solute-binding protein.
      
 0.424
Ccel_0439
Hypothetical protein.
       0.415
Ccel_0440
PFAM: Resolvase domain; Recombinase; KEGG: drm:Dred_0913 resolvase domain-containing protein.
       0.413
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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