Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ccel_0440PFAM: Resolvase domain; Recombinase; KEGG: drm:Dred_0913 resolvase domain-containing protein. (552 aa)    
Predicted Functional Partners:
Ccel_0439
Hypothetical protein.
       0.768
Ccel_2698
Hypothetical protein; KEGG: hmo:HM1_0131 resolvase, N-terminal:recombinase, putative.
  
     0.570
Ccel_2730
PFAM: Recombinase; KEGG: dsy:DSY3427 hypothetical protein.
  
     0.489
Ccel_0438
TIGRFAM: carbon-monoxide dehydrogenase, catalytic subunit; PFAM: Prismane; KEGG: cth:Cthe_2801 carbon-monoxide dehydrogenase, catalytic subunit.
       0.487
Ccel_0437
SMART: extracellular solute-binding protein family 3; KEGG: cth:Cthe_2802 NlpA lipoprotein.
       0.413
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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