STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0468TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (445 aa)    
Predicted Functional Partners:
Ccel_0469
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein.
 
  
 0.960
Ccel_0466
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1763 ABC transporter related protein.
 
 
 0.833
Ccel_0467
Hypothetical protein; KEGG: bay:RBAM_014080 YknW.
 
     0.827
Ccel_2265
KEGG: amt:Amet_1032 ABC-type bacteriocin transporter; TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter transmembrane region; ABC transporter related; peptidase C39 bacteriocin processing; SMART: AAA ATPase.
  
 
 0.804
Ccel_3019
PFAM: S-layer domain protein; KEGG: swo:Swol_0298 hypothetical protein.
 
 
 0.783
Ccel_3395
KEGG: cno:NT01CX_1552 hypothetical protein.
  
 
 0.737
Ccel_3396
Outer membrane protein-like protein; KEGG: cth:Cthe_1765 hypothetical protein.
  
 
 0.737
Ccel_2681
KEGG: amt:Amet_4173 hypothetical protein.
  
  
 0.600
hisI
TIGRFAM: phosphoribosyl-ATP diphosphatase; PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: cth:Cthe_2889 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; In the N-terminal section; belongs to the PRA-CH family.
  
    0.548
Ccel_1144
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afl:Aflv_0303 multidomain redox protein (NAD(FAD)-dependent oxidoreductase; rhodanese domain; SirA-like redox domain; peroxiredoxin domain); Belongs to the sulfur carrier protein TusA family.
  
    0.473
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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