Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0469PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein. (405 aa)    
Predicted Functional Partners:
Ccel_0466
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1763 ABC transporter related protein.
 
 0.997
Ccel_0855
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_2430 ABC transporter, ATP-binding protein.
 
 0.991
Ccel_2703
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bat:BAS3158 ABC transporter, ATP-binding protein.
 
 0.973
Ccel_0557
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_3392 hypothetical protein.
 
 0.970
Ccel_1151
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbl:CLK_0187 ABC transporter, ATP-binding protein.
 
 0.970
Ccel_0468
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.964
Ccel_2356
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_2590 ABC transporter related.
 
 0.963
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
   
 0.864
Ccel_0887
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3385 hypothetical protein.
 
      0.854
Ccel_2587
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cno:NT01CX_0934 ABC transporter.
 
      0.807
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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