Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0490TIGRFAM: sporulation protein YhbH; PFAM: protein of unknown function DUF444; KEGG: cth:Cthe_1204 hypothetical protein; Belongs to the UPF0229 family. (398 aa)    
Predicted Functional Partners:
Ccel_0489
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: cth:Cthe_1205 putative serine protein kinase, PrkA.
 
  
 0.995
Ccel_0491
PFAM: SpoVR family protein; KEGG: cth:Cthe_1203 hypothetical protein.
 
  
 0.994
Ccel_0492
PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; KEGG: cth:Cthe_0550 heat shock protein 90.
     
 0.452
Ccel_0488
PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_3186 radical SAM family protein.
  
    0.443
Ccel_0017
TIGRFAM: spore coat protein, CotS family; KEGG: cth:Cthe_2398 putative spore coat protein.
  
  
 0.437
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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