STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0491PFAM: SpoVR family protein; KEGG: cth:Cthe_1203 hypothetical protein. (462 aa)    
Predicted Functional Partners:
Ccel_0489
PFAM: PrkA serine kinase; PrkA AAA domain protein; KEGG: cth:Cthe_1205 putative serine protein kinase, PrkA.
 
  
 0.995
Ccel_0490
TIGRFAM: sporulation protein YhbH; PFAM: protein of unknown function DUF444; KEGG: cth:Cthe_1204 hypothetical protein; Belongs to the UPF0229 family.
 
  
 0.995
Ccel_0492
PFAM: heat shock protein Hsp90; ATP-binding region ATPase domain protein; KEGG: cth:Cthe_0550 heat shock protein 90.
       0.498
Ccel_1553
Hypothetical protein; KEGG: cau:Caur_2780 endonuclease/exonuclease/phosphatase.
   
    0.450
Ccel_1338
PFAM: Peptidoglycan-binding LysM; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0635 protein serine/threonine phosphatases.
  
  
 0.407
Ccel_1752
TIGRFAM: stage II sporulation protein M; PFAM: protein of unknown function DUF95 transmembrane; KEGG: cth:Cthe_0675 hypothetical protein.
  
   
 0.403
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.