STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0502Hypothetical protein; KEGG: cac:CAC0037 MinD family ATPase. (378 aa)    
Predicted Functional Partners:
Ccel_0504
KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein.
 
  
 0.984
Ccel_0505
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
 
  
 0.982
Ccel_0503
PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E.
 
  
 0.963
Ccel_0512
PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_0545 prepilin peptidase CpaA.
 
  
 0.884
Ccel_0508
Hypothetical protein; KEGG: cth:Cthe_1835 viral A-type inclusion repeat-containing protein.
 
     0.878
Ccel_0507
KEGG: cth:Cthe_1336 hypothetical protein.
  
  
 0.865
Ccel_0511
PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain-containing protein.
 
     0.863
Ccel_0114
PFAM: type II secretion system protein E; KEGG: cbl:CLK_A0282 hypothetical protein.
 
  
 0.838
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
 
     0.827
Ccel_2775
KEGG: hmo:HM1_0588 hypothetical protein.
  
  
 0.710
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.