Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0504KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein. (247 aa)    
Predicted Functional Partners:
Ccel_0503
PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E.
 
 
 0.996
Ccel_0505
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
 
  
 0.994
Ccel_0114
PFAM: type II secretion system protein E; KEGG: cbl:CLK_A0282 hypothetical protein.
 
 
 0.987
Ccel_0502
Hypothetical protein; KEGG: cac:CAC0037 MinD family ATPase.
 
  
 0.983
Ccel_2776
PFAM: type II secretion system protein E; KEGG: hmo:HM1_0587 type II/IV secretion system protein.
 
 
 0.967
Ccel_2774
KEGG: hmo:HM1_0589 hypothetical protein.
  
 
 0.961
Ccel_3139
Hypothetical protein; KEGG: drm:Dred_0825 type II secretion system protein E.
 
  
  0.949
Ccel_0512
PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_0545 prepilin peptidase CpaA.
 
  
 0.903
Ccel_2775
KEGG: hmo:HM1_0588 hypothetical protein.
     
  0.900
Ccel_0508
Hypothetical protein; KEGG: cth:Cthe_1835 viral A-type inclusion repeat-containing protein.
 
     0.880
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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