Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0507KEGG: cth:Cthe_1336 hypothetical protein. (198 aa)    
Predicted Functional Partners:
Ccel_0502
Hypothetical protein; KEGG: cac:CAC0037 MinD family ATPase.
  
  
 0.877
Ccel_0505
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
  
  
 0.798
Ccel_0504
KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein.
  
  
 0.794
Ccel_0510
PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV.
  
  
 0.779
Ccel_0508
Hypothetical protein; KEGG: cth:Cthe_1835 viral A-type inclusion repeat-containing protein.
       0.760
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
       0.729
Ccel_0503
PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E.
  
  
 0.711
Ccel_0512
PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_0545 prepilin peptidase CpaA.
  
  
 0.640
Ccel_0511
PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain-containing protein.
       0.637
Ccel_0112
PFAM: SAF domain protein; KEGG: cac:CAC1974 hypothetical protein.
  
  
 0.624
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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