Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0518PFAM: 3D domain protein; KEGG: cth:Cthe_0664 hypothetical protein. (263 aa)    
Predicted Functional Partners:
Ccel_0517
KEGG: cbh:CLC_1710 hypothetical protein.
 
     0.804
Ccel_1338
PFAM: Peptidoglycan-binding LysM; SMART: protein phosphatase 2C domain protein; KEGG: cth:Cthe_0635 protein serine/threonine phosphatases.
  
  
 0.768
Ccel_1507
KEGG: mag:amb1890 LysM domain-containing protein.
   
  
 0.651
Ccel_1202
PFAM: YbbR family protein; KEGG: cth:Cthe_1165 YbbR-like protein.
  
     0.625
Ccel_0390
Hypothetical protein; KEGG: csc:Csac_0946 TPR repeat-containing protein.
  
     0.624
Ccel_1562
PFAM: Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase; SMART: Lysozyme subfamily 2; KEGG: cac:CAC2325 N-acetylglucosaminidase domain- and ChW repeat-containing cell wall hydrolase.
   
    0.598
Ccel_0728
PFAM: type 3a cellulose-binding domain protein; cellulosome anchoring protein cohesin region; protein of unknown function DUF291; KEGG: cth:Cthe_3077 cellulosome anchoring protein, cohesin region.
  
     0.596
Ccel_0167
KEGG: dsy:DSY2213 hypothetical protein.
  
     0.581
Ccel_0804
KEGG: cth:Cthe_2732 hypothetical protein.
  
     0.572
Ccel_3399
KEGG: cth:Cthe_2348 Ig-related protein.
  
    0.570
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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