STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0527TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: cth:Cthe_0960 SpoIID/LytB domain-containing protein. (546 aa)    
Predicted Functional Partners:
Ccel_0278
PFAM: S-layer domain protein; KEGG: cth:Cthe_2613 S-layer-like domain-containing protein.
  
     0.603
Ccel_2883
PFAM: glycosyl transferase group 1; polysaccharide pyruvyl transferase; KEGG: cth:Cthe_2702 polysaccharide pyruvyl transferase.
  
     0.573
Ccel_1717
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cth:Cthe_0727 cell envelope-related transcriptional attenuator.
 
   
 0.523
Ccel_0289
PFAM: S-layer domain protein; KEGG: cth:Cthe_1931 S-layer-like domain-containing protein.
  
     0.517
Ccel_2393
PFAM: S-layer domain protein; KEGG: btk:BT9727_0789 S-layer protein.
 
     0.509
Ccel_1376
PFAM: S-layer domain protein; copper amine oxidase domain protein; KEGG: lsp:Bsph_1041 putative S-layer protein/N-acetylmuramoyl-L-alanine amidase.
  
     0.503
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
     0.481
Ccel_0666
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cth:Cthe_0727 cell envelope-related transcriptional attenuator.
 
   
 0.478
Ccel_2633
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
 
     0.473
Ccel_3132
PFAM: S-layer domain protein; KEGG: amt:Amet_3262 NLP/P60 protein.
 
     0.468
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.