Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0532KEGG: cth:Cthe_0955 hypothetical protein. (134 aa)    
Predicted Functional Partners:
Ccel_1911
KEGG: cth:Cthe_0840 hypothetical protein.
  
    0.775
Ccel_0172
KEGG: cth:Cthe_2091 hypothetical protein.
  
     0.766
Ccel_0279
PFAM: Protein of unknown function DUF1779; KEGG: cth:Cthe_2614 hypothetical protein.
  
     0.748
Ccel_0477
KEGG: cth:Cthe_0980 cell division protein FtsL.
  
     0.733
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
     0.727
Ccel_0079
KEGG: cth:Cthe_2259 hypothetical protein.
  
     0.720
Ccel_0288
Hypothetical protein; KEGG: cth:Cthe_1932 S-layer-like domain-containing protein.
  
     0.715
Ccel_3081
PFAM: Septum formation initiator; KEGG: cth:Cthe_2661 septum formation initiator.
  
     0.678
Ccel_0021
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
  
    0.662
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
  
     0.650
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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