Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ccel_0544PFAM: protein of unknown function DUF34; KEGG: cpe:CPE2004 hypothetical protein. (264 aa)    
Predicted Functional Partners:
Ccel_0543
PFAM: protein of unknown function DUF633; KEGG: cth:Cthe_0893 hypothetical protein.
 
  
 0.969
Ccel_1857
Transcriptional regulator, GntR family with aminotransferase domain; PFAM: regulatory protein GntR HTH; aminotransferase class I and II; KEGG: aoe:Clos_1183 transcriptional regulator.
   
    0.600
Ccel_2277
TIGRFAM: peptidase T-like protein; PFAM: peptidase M20; peptidase M42 family protein; peptidase dimerisation domain protein; KEGG: amt:Amet_0148 peptidase T-like protein.
 
    0.592
Ccel_1091
PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: cac:CAC2332 dTDP-D-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.583
Ccel_2288
TIGRFAM: glycogen debranching enzyme; PFAM: Amylo-alpha-16-glucosidase; KEGG: cth:Cthe_0115 glycogen debranching enzyme, putative.
    
   0.521
Ccel_0722
Putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; KEGG: bpu:BPUM_2114 aminotransferase.
   
    0.506
Ccel_0542
Hypothetical protein.
       0.473
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
 
   
 0.429
Ccel_0969
PFAM: NAD-dependent epimerase/dehydratase; polysaccharide biosynthesis protein CapD; Male sterility domain; KEGG: dol:Dole_0520 NAD-dependent epimerase/dehydratase.
  
    0.424
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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