STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0557PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ckl:CKL_3392 hypothetical protein. (225 aa)    
Predicted Functional Partners:
Ccel_0558
PFAM: protein of unknown function DUF214; KEGG: ckl:CKL_3391 hypothetical protein.
 
 
 0.977
Ccel_0469
PFAM: protein of unknown function DUF214; KEGG: cth:Cthe_1761 hypothetical protein.
 
 0.976
Ccel_1152
PFAM: protein of unknown function DUF214; KEGG: cbh:CLC_0840 putative ABC transporter, permease protein.
 
 
 0.873
Ccel_0560
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: spj:MGAS2096_Spy1107 two-component system histidine kinase.
 
     0.854
Ccel_2355
PFAM: protein of unknown function DUF214; KEGG: lmf:LMOf2365_1233 ABC transporter, permease protein.
 
 
 0.723
Ccel_0856
PFAM: protein of unknown function DUF214; KEGG: afw:Anae109_0497 hypothetical protein.
 
 
 0.707
Ccel_0857
PFAM: protein of unknown function DUF214; KEGG: ade:Adeh_3937 hypothetical protein.
 
 
 0.697
Ccel_0559
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cdf:CD1957 two-component response regulator.
 
     0.686
Ccel_2681
KEGG: amt:Amet_4173 hypothetical protein.
  
 
 0.671
Ccel_0595
KEGG: cth:Cthe_0793 hypothetical protein.
  
 
 0.615
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.