Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_0569PFAM: protein of unknown function DUF881; KEGG: cth:Cthe_1076 hypothetical protein. (243 aa)    
Predicted Functional Partners:
Ccel_2066
PFAM: protein of unknown function DUF1290; KEGG: cth:Cthe_0443 hypothetical protein.
 
  
 0.877
Ccel_0570
PFAM: protein of unknown function DUF881; KEGG: cth:Cthe_1075 hypothetical protein.
 
    
0.844
Ccel_0170
3D domain protein; PFAM: protein of unknown function DUF348; 3D domain protein; G5 domain protein; KEGG: cth:Cthe_2093 hypothetical protein.
 
     0.602
Ccel_0571
PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_1074 polysaccharide deacetylase.
       0.475
Ccel_0572
TIGRFAM: sporulation protein YqfC; PFAM: protein of unknown function DUF1429; KEGG: cth:Cthe_1073 hypothetical protein.
       0.429
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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