STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0624PFAM: Radical SAM domain protein; KEGG: cbe:Cbei_4361 radical SAM domain protein. (339 aa)    
Predicted Functional Partners:
Ccel_0625
PFAM: YibE/F family protein; KEGG: dsy:DSY3067 hypothetical protein.
       0.574
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
   
 0.552
Ccel_2925
Putative transcriptional regulator, CopG family; PFAM: CopG domain protein DNA-binding domain protein; KEGG: aoe:Clos_2274 CopG family transcriptional regulator.
  
    0.479
Ccel_1988
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: cpo:COPRO5265_0045 chitin synthase.
  
     0.452
Ccel_3212
Protein of unknown function DUF204; Probably functions as a manganese efflux pump.
  
     0.436
Ccel_0352
PFAM: UV-endonuclease UvdE; KEGG: cth:Cthe_1958 putative UV damage endonuclease.
  
   
 0.435
Ccel_1928
KEGG: ckl:CKL_3623 hypothetical protein.
 
     0.407
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.