Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0643PFAM: S-layer domain protein; glycoside hydrolase family 18; SMART: chitinase II; KEGG: aoe:Clos_1547 glycoside hydrolase family protein. (542 aa)    
Predicted Functional Partners:
Ccel_2893
Chitinase II; SMART: leucine-rich repeat-containing protein typical subtype; chitinase II; KEGG: cpy:Cphy_1815 leucine-rich repeat-containing protein.
  
   
 0.576
Ccel_0039
PFAM: S-layer domain protein; KEGG: cth:Cthe_2877 S-layer-like domain-containing protein.
  
     0.556
Ccel_0428
PFAM: S-layer domain protein; glycoside hydrolase family 5; Carbohydrate binding family 17/28; KEGG: csc:Csac_0678 cellulase.
  
  
 0.528
Ccel_0644
PFAM: cobalbumin biosynthesis protein; SMART: AAA ATPase; KEGG: tte:TTE0381 adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase.
       0.506
Ccel_3013
TIGRFAM: germination protein, Ger(x)C family; PFAM: spore germination B3 GerAC family protein; KEGG: aoe:Clos_2719 spore germination B3 GerAC family protein.
  
     0.490
Ccel_3011
TIGRFAM: spore germination protein; PFAM: Spore germination protein; KEGG: aoe:Clos_2720 spore germination protein.
  
     0.486
Ccel_0275
PFAM: S-layer domain protein; KEGG: drm:Dred_2357 S-layer domain-containing protein.
  
     0.476
cobS
Cobalamin 5'-phosphate synthase; Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'- phosphate; Belongs to the CobS family.
       0.466
Ccel_0517
KEGG: cbh:CLC_1710 hypothetical protein.
  
  
 0.443
Ccel_0666
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: cth:Cthe_0727 cell envelope-related transcriptional attenuator.
  
     0.427
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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