Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0691PFAM: Coat F domain protein; KEGG: cac:CAC1335 spore coat protein F (cotf) related protein. (189 aa)    
Predicted Functional Partners:
tlp
TIGRFAM: small, acid-soluble spore protein tlp; KEGG: cbe:Cbei_4610 small acid-soluble spore protein Tlp; Belongs to the Tlp family.
  
  
 0.774
Ccel_1655
PFAM: cellulosome protein dockerin type I; KEGG: sus:Acid_0258 hypothetical protein.
  
     0.732
Ccel_3154
KEGG: tpd:Teth39_0051 hypothetical protein.
  
     0.553
Ccel_0690
Manganese and iron superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
     
 0.522
Ccel_1217
PFAM: Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
     0.520
Ccel_1302
Putative transcriptional regulator, TetR family; KEGG: ckl:CKL_2387 transcriptional regulator.
  
     0.516
Ccel_0142
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; histidine kinase HAMP region domain protein; KEGG: cpy:Cphy_1915 AraC family transcriptional regulator.
  
     0.508
Ccel_1780
PFAM: CBS domain containing protein; KEGG: cth:Cthe_2352 signal-transduction protein.
   
    0.507
Ccel_1210
KEGG: mac:MA1194 hypothetical protein.
  
     0.494
Ccel_1213
PFAM: condensation domain protein; Alcohol acetyltransferase; KEGG: mac:MA1194 hypothetical protein.
  
     0.486
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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