Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ccel_0699KEGG: csc:Csac_0715 amino acid transporter-like protein. (627 aa)    
Predicted Functional Partners:
Ccel_0700
PFAM: ROK family protein; KEGG: cth:Cthe_2938 glucokinase.
  
  
 0.611
Ccel_3198
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase; KEGG: cdf:CD2966 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
 
 0.609
Ccel_2331
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bsu:BSU17180 polyketide synthase of type I.
  
 
 0.576
Ccel_0701
KEGG: amt:Amet_3099 hypothetical protein.
       0.529
Ccel_1144
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: afl:Aflv_0303 multidomain redox protein (NAD(FAD)-dependent oxidoreductase; rhodanese domain; SirA-like redox domain; peroxiredoxin domain); Belongs to the sulfur carrier protein TusA family.
  
  
 0.529
Ccel_2378
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; condensation domain protein; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KR domain protein; Beta-ketoacyl synthase; KEGG: bld:BLi00401 lichenysin synthetase A.
  
 
 0.466
arcA
PFAM: amidinotransferase; KEGG: amt:Amet_3161 arginine deiminase.
  
  
 0.443
Ccel_0864
TIGRFAM: amino acid adenylation domain protein; PFAM: alpha/beta hydrolase fold; AMP-dependent synthetase and ligase; condensation domain protein; phosphopantetheine-binding; Beta-ketoacyl synthase; KEGG: bay:RBAM_016980 BaeJ.
  
 
 0.436
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.430
Ccel_1960
TIGRFAM: YhgE/Pip N-terminal domain protein; YhgE/Pip C-terminal domain protein; PFAM: ABC-2 type transporter; KEGG: cpy:Cphy_0609 hypothetical protein.
 
     0.428
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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