Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_0720PFAM: protein of unknown function UPF0102; KEGG: cth:Cthe_0758 hypothetical protein; Belongs to the UPF0102 family. (126 aa)    
Predicted Functional Partners:
Ccel_0719
KEGG: cth:Cthe_0759 flagellar biosynthesis.
       0.820
Ccel_2058
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; KEGG: cth:Cthe_0455 Mg chelatase, subunit ChlI.
 
  
 0.802
Ccel_0721
PFAM: peptidase M19 renal dipeptidase; KEGG: cth:Cthe_0756 thermostable dipeptidase.
       0.711
Ccel_2057
TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cth:Cthe_0459 DNA protecting protein DprA.
 
  
 0.707
Ccel_0718
KEGG: cth:Cthe_0760 hypothetical protein.
       0.702
Ccel_0090
PFAM: phosphoribosyltransferase; KEGG: cth:Cthe_2248 phosphoribosyltransferase.
 
    0.687
rnhB
Ribonuclease HII/HIII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.605
ruvC
Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
 
     0.513
Ccel_0716
GTP1/OBG protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.478
Ccel_0715
TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: cth:Cthe_0764 signal peptidase I.
  
    0.456
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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