Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
Ccel_0725KEGG: cth:Cthe_1169 beta-lactamase class A-like protein. (370 aa)    
Predicted Functional Partners:
Ccel_0277
PFAM: Fibronectin type III domain protein; KEGG: cth:Cthe_2612 fibronectin, type III.
  
     0.625
Ccel_0724
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: cth:Cthe_0740 GntR family transcriptional regulator.
 
     0.579
Ccel_0042
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: cth:Cthe_2419 DNA replication protein DnaD.
  
   
 0.575
Ccel_3397
PFAM: S-layer domain protein; KEGG: cth:Cthe_2348 Ig-related protein.
  
     0.575
Ccel_3081
PFAM: Septum formation initiator; KEGG: cth:Cthe_2661 septum formation initiator.
 
     0.562
Ccel_0288
Hypothetical protein; KEGG: cth:Cthe_1932 S-layer-like domain-containing protein.
  
     0.520
Ccel_0522
PFAM: Spore germination protein; KEGG: cth:Cthe_0670 spore germination protein.
  
     0.516
Ccel_0274
PFAM: S-layer domain protein; Fibronectin type III domain protein; KEGG: cth:Cthe_2454 fibronectin, type III.
  
     0.505
Ccel_0726
PFAM: SNARE associated Golgi protein; KEGG: cma:Cmaq_1693 SNARE associated Golgi protein.
     
 0.504
Ccel_0509
KEGG: cth:Cthe_1830 hypothetical protein.
  
     0.498
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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