Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0742KEGG: cpy:Cphy_2263 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Ccel_0743
PFAM: cell wall hydrolase/autolysin; KEGG: aoe:Clos_2218 cell wall hydrolase/autolysin.
       0.566
Ccel_0741
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: cbe:Cbei_3221 transcriptional regulator, LysR family.
       0.509
Ccel_1011
PFAM: glycoside hydrolase family 43; KEGG: cpy:Cphy_0531 alpha-N-arabinofuranosidase; Belongs to the glycosyl hydrolase 43 family.
  
     0.503
Ccel_0735
PFAM: glycoside hydrolase family 9; type 3a cellulose-binding domain protein; cellulosome protein dockerin type I; KEGG: cth:Cthe_2360 glycoside hydrolase family protein.
  
 
 0.425
Ccel_1258
PFAM: glycoside hydrolase family 8; KEGG: bha:BH2105 xylanase Y.
 
   
 0.416
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.