Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ccel_0797PFAM: iron dependent repressor; KEGG: cth:Cthe_1402 DtxR family iron dependent repressor. (159 aa)    
Predicted Functional Partners:
mntH
Mn2+/Fe2+ transporter, NRAMP family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
 
  
 0.633
Ccel_3414
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cpy:Cphy_3490 ABC transporter related.
  
  
 0.556
Ccel_0963
KEGG: dsy:DSY0671 hypothetical protein.
    
   0.512
Ccel_3413
ABC-3 protein; PFAM: transport system permease protein; ABC-3 protein; KEGG: cpy:Cphy_3489 ABC-3 protein.
 
  
 0.486
Ccel_0798
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cth:Cthe_1777 amidohydrolase.
  
    0.479
Ccel_0800
PFAM: peptidase M22 glycoprotease; KEGG: cth:Cthe_1775 peptidase M22, glycoprotease.
       0.479
Ccel_0799
PFAM: protein of unknown function UPF0079; KEGG: cth:Cthe_1776 hypothetical protein.
       0.476
Ccel_0801
Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18.
  
    0.468
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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