STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ccel_0801Ribosomal-protein-alanine acetyltransferase; Acetylates the N-terminal alanine of ribosomal protein S18. (150 aa)    
Predicted Functional Partners:
Ccel_0800
PFAM: peptidase M22 glycoprotease; KEGG: cth:Cthe_1775 peptidase M22, glycoprotease.
 
 
 0.986
Ccel_0799
PFAM: protein of unknown function UPF0079; KEGG: cth:Cthe_1776 hypothetical protein.
  
  
 0.881
Ccel_0798
PFAM: amidohydrolase; Amidohydrolase 3; KEGG: cth:Cthe_1777 amidohydrolase.
       0.797
Ccel_0802
KEGG: cth:Cthe_1773 peptidase S16, lon-like protein.
       0.671
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
  
 0.545
Ccel_0805
KEGG: nth:Nther_2043 hypothetical protein.
       0.509
Ccel_0797
PFAM: iron dependent repressor; KEGG: cth:Cthe_1402 DtxR family iron dependent repressor.
       0.462
Ccel_0803
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: cth:Cthe_2731 ECF subfamily RNA polymerase sigma-24 factor.
  
    0.441
Ccel_0804
KEGG: cth:Cthe_2732 hypothetical protein.
       0.432
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.419
Your Current Organism:
Ruminiclostridium cellulolyticum
NCBI taxonomy Id: 394503
Other names: Clostridium cellulolyticum H10, R. cellulolyticum H10, Ruminiclostridium cellulolyticum H10
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